Package: gems 1.1.1

gems: Generalized Multistate Simulation Model

Simulate and analyze multistate models with general hazard functions. gems provides functionality for the preparation of hazard functions and parameters, simulation from a general multistate model and predicting future events. The multistate model is not required to be a Markov model and may take the history of previous events into account. In the basic version, it allows to simulate from transition-specific hazard function, whose parameters are multivariable normally distributed.

Authors:Luisa Salazar Vizcaya, Nello Blaser, Thomas Gsponer

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gems.pdf |gems.html
gems/json (API)

# Install 'gems' in R:
install.packages('gems', repos = c('https://svizcaya.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • tavi - Tavi data set

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.52 score 33 scripts 290 downloads 13 exports 22 dependencies

Last updated 8 years agofrom:26288ef55d. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 29 2024
R-4.5-winOKOct 29 2024
R-4.5-linuxOKOct 29 2024
R-4.4-winOKOct 29 2024
R-4.4-macOKOct 29 2024
R-4.3-winOKOct 29 2024
R-4.3-macOKOct 29 2024

Exports:cumulativeIncidencegenerateHazardMatrixgenerateParameterCovarianceMatrixgenerateParameterMatrixheadplotpossibleTransitionsprintsimulateCohortsummarytailtransitionProbabilitiesupdate

Dependencies:clidata.tableexpmfansigenericsgluelatticelifecyclemagrittrMASSMatrixmsmmvtnormpillarpkgconfigplyrRcpprlangsurvivaltibbleutf8vctrs

gems

Rendered fromgems.Rnwusingutils::Sweaveon Oct 29 2024.

Last update: 2015-03-11
Started: 2015-03-11

Readme and manuals

Help Manual

Help pageTopics
Class '"ArtCohort"'ArtCohort ArtCohort-class head,ArtCohort-method head.ArtCohort summary,ArtCohort-method summary.ArtCohort tail,ArtCohort-method tail.ArtCohort update,ArtCohort-method update.ArtCohort [,ArtCohort,ANY,ANY,ANY-method [,ArtCohort-method [.ArtCohort
transition probabilitiescumulativeIncidence
gems: Generalized Multistate Simulation Modelgems-package gems
generate template for transition functionsgenerateHazardMatrix
generate a template for parameter covariancesgenerateParameterCovarianceMatrix
generate a template for mean parametersgenerateParameterMatrix
Class '"PosteriorProbabilities"'head,PosteriorProbabilities-method head.PosteriorProbabilities plot,PosteriorProbabilities-method plot.PosteriorProbabilities PosteriorProbabilities PosteriorProbabilities-class tail,PosteriorProbabilities-method tail.PosteriorProbabilities [,PosteriorProbabilities,ANY,ANY,ANY-method [,PosteriorProbabilities-method [.PosteriorProbabilities
Simulate cohortsimulateCohort
tavi data settavi
Class '"transition.structure"'possibleTransitions possibleTransitions,transition.structure-method print,transition.structure-method print.transition.structure transition.structure transition.structure-class [[,transition.structure-method [[.transition.structure [[<-,transition.structure-method [[<-.transition.structure
transition probabilitiestransitionProbabilities